Legofit
infers population history from nucleotide site patterns.
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flatfile.py File Reference

Functions

 flatfile.usage (msg1)
 flatfile.parselegofit (fname)

Variables

list flatfile.fnames = []
bool flatfile.transpose = False
int flatfile.i = 1
 flatfile.end
list flatfile.allmaps = []
 flatfile.allnames = set([])
 flatfile.estmap = parselegofit(name)
 flatfile.name
 flatfile.file
 flatfile.npar = len(allnames)
 flatfile.nfile = len(fnames)
 flatfile.mat = nfile*[None]
int flatfile.k = 0
 flatfile.nrows = npar
 flatfile.ncols = len(fnames)
 flatfile.val