joinraf

Merge two or more raf files

Joinraf: merge two or more raf files

Joinraf reads several files in .raf format and prints a single raf file to standard output. The output includes only those positions at which chromosome, position, ref, and alt match in all the input files. (Missing values in alt are allowed.) In the output file, the reference allele frequency (raf) is the unweighted average of those in the input files.

Usage

joinraf <in_1> <in_2> ...
   where <in_i> are input files in raf format.   Writes to standard output.
   Each input file should summarize the same number of genomes.
Maximum number of input files: 64

Copyright

Copyright (c) 2018, Alan R. Rogers roger.nosp@m.s@an.nosp@m.thro..nosp@m.utah.nosp@m..edu. This file is released under the Internet Systems Consortium License, which can be found in file "LICENSE".