legofit/html/gene_8h_source.html

#ifndef ARR_GENE

#define ARR_GENE


#  include "typedefs.h"

#  include "branchtab.h"


struct Gene {

    tipId_t     tipId;

    struct Gene *parent, *lchild, *rchild;

    double      branch;

};


Gene       *Gene_join(Gene * lchild, Gene * rchild);

Gene       *Gene_new(tipId_t tipId);

void        Gene_tabulate(Gene * self, BranchTab * bt, int doSing);

void        Gene_free(Gene * gene);


static inline void Gene_addToBranch(Gene * gene, double x);


static inline void Gene_addToBranch(Gene * gene, double x) {

    gene->branch += x;

}


#endif

Gene_tabulate
void Gene_tabulate(Gene *self, BranchTab *bt, int doSing)
Tabulate branch lengths by tipId.
Definition: gene.c:41

Gene_new
Gene * Gene_new(tipId_t tipId)
Constructor for Gene.
Definition: gene.c:19

Gene_free
void Gene_free(Gene *gene)
Destroy a Gene.
Definition: gene.c:68

Gene_join
Gene * Gene_join(Gene *lchild, Gene *rchild)
Create a parental Gene by coalescing two children.
Definition: gene.c:57

BranchTab
Definition: branchtab.c:20

Gene
Definition: gene.h:7