Legofit
infers population history from nucleotide site patterns.

Merge two or more raf files

Joinraf: merge two or more raf files

Joinraf reads several files in .raf format and prints a single raf file to standard output. The output includes only those positions at which chromosome, position, ref, and alt match in all the input files. (Missing values in alt are allowed.) In the output file, the reference allele frequency (raf) is the unweighted average of those in the input files.

Usage