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#ifndef ARR_LBLNDX

#  define ARR_LBLNDX


#  include "gptree.h"

#  include "popnode.h"

#  include "strdblqueue.h"


struct LblNdx {

    unsigned    n;              // number of samples

    char        lbl[MAXSAMP][POPNAMESIZE];

};


void        LblNdx_init(LblNdx * self);

void        LblNdx_addSamples(LblNdx * self, unsigned nsamples,

                              const char *lbl);

const char *LblNdx_lbl(const LblNdx * self, unsigned i);

unsigned    LblNdx_size(const LblNdx * self);

void        LblNdx_sanityCheck(const LblNdx *self, const char *file, int line);

int         LblNdx_equals(const LblNdx *lhs, const LblNdx *rhs);

tipId_t     LblNdx_getTipId(const LblNdx *self, const char *lbl);

void        LblNdx_print(const LblNdx *self, FILE *fp);

int         LblNdx_collapse(LblNdx *self, tipId_t collapse, const char *lbl);

int         LblNdx_rmPops(LblNdx *self, tipId_t remove);

int         LblNdx_from_StrDblQueue(LblNdx *lndx, StrDblQueue *queue);

char       *patLbl(size_t n, char buff[n], tipId_t tid, const LblNdx * lblndx);

void        orderpat(int n, unsigned order[n], tipId_t tid[n]);

int         compare_tipId(const void *void_x, const void *void_y);


#endif

LblNdx_collapse
int LblNdx_collapse(LblNdx *self, tipId_t collapse, const char *lbl)
Reduce dimension of LblNdx object by collapsing several entries into a single entry.
Definition: lblndx.c:305

LblNdx_lbl
const char * LblNdx_lbl(const LblNdx *self, unsigned i)
Return the label associated with index i.
Definition: lblndx.c:55

LblNdx_addSamples
void LblNdx_addSamples(LblNdx *self, unsigned nsamples, const char *lbl)
Add samples for a single population.
Definition: lblndx.c:30

LblNdx_size
unsigned LblNdx_size(const LblNdx *self)
Return number of samples, which equals number of labels.
Definition: lblndx.c:61

LblNdx_init
void LblNdx_init(LblNdx *self)
Set everything to zero.
Definition: lblndx.c:23

patLbl
char * patLbl(size_t n, char buff[n], tipId_t tid, const LblNdx *lblndx)
Generate a label for site pattern tid.
Definition: lblndx.c:166

LblNdx_from_StrDblQueue
int LblNdx_from_StrDblQueue(LblNdx *lndx, StrDblQueue *queue)
Initialize a pre-allocated LblNdx from a StrDblQueue.
Definition: lblndx.c:359

orderpat
void orderpat(int n, unsigned ord[n], tipId_t pat[n])
On entry, pat is an array of n tipId_t values.
Definition: lblndx.c:251

LblNdx_equals
int LblNdx_equals(const LblNdx *lhs, const LblNdx *rhs)
Return 1 if the two arguments are equal; 0 otherwise.
Definition: lblndx.c:79

LblNdx_print
void LblNdx_print(const LblNdx *self, FILE *fp)
Print a LblNdx.
Definition: lblndx.c:158

LblNdx_getTipId
tipId_t LblNdx_getTipId(const LblNdx *self, const char *lbl)
Reverse lookup.
Definition: lblndx.c:116

compare_tipId
int compare_tipId(const void *void_x, const void *void_y)
Compare pointers to two tipId_t values.
Definition: lblndx.c:226

LblNdx
Definition: lblndx.h:8

StrDblQueue
Definition: strdblqueue.h:22