Legofit
infers population history from nucleotide site patterns.
Functions | Variables
legofit.c File Reference
#include "branchtab.h"
#include "comb.h"
#include "cost.h"
#include "diffev.h"
#include "lblndx.h"
#include "matcoal.h"
#include "network.h"
#include "parseopf.h"
#include "parstore.h"
#include "patprob.h"
#include "pointbuff.h"
#include "simsched.h"
#include "state.h"
#include <assert.h>
#include <float.h>
#include <getopt.h>
#include <gsl/gsl_sf_gamma.h>
#include <libgen.h>
#include <limits.h>
#include <math.h>
#include <pthread.h>
#include <signal.h>
#include <stdio.h>
#include <string.h>
#include <sys/types.h>
#include <time.h>
#include <unistd.h>

Functions

void usage (void)
 
void * ThreadState_new (void *notused)
 
void ThreadState_free (void *rng)
 
int main (int argc, char **argv)
 

Variables

pthread_mutex_t seedLock
 
unsigned long rngseed
 
tipId_t union_all_samples
 
volatile sig_atomic_t sigstat