Legofit
infers population history from nucleotide site patterns.
mapmix

Map admixture across the genome.

Mapmix: estimate admixture at each nucleotide site

mapmix –zero <a.legosim> –one <b.legosim> @section autotoc_md13 <x>=<in_1> <y>=<in_2> ... outgroup=<in_K>