Legofit
infers population history from nucleotide site patterns.

ms2sim translates output from Dick Hudson's ms program into "sim" format, which is described on the simpat page.

ms2sim, a program that converts ms output into sim format, which

can be piped to simpat, which tabulates site pattern frequencies.

This program is written in C, because the conversion involves transposing a large matrix, and this is faster in C.