network.c File Reference

Models a network of populations. More...

#include "branchtab.h"
#include "gptree.h"
#include "mctree.h"
#include "popnode.h"
#include "segment.h"
#include <gsl/gsl_rng.h>
#include "network.h"

Data Structures
struct	Network

Functions
void	Network_init (enum NetworkType type)
	Initialize model of network.
void	Network_patprob (void *self, BranchTab *branchtab, gsl_rng *rng, unsigned long nreps, int doSing, long unsigned *event_counter)

Detailed Description

Models a network of populations.

Author

Alan R. Rogers

Legofit supports two models of the network of populations. One of these (PopNode and GPTree) calculate probabilities by coalescent simulation. The other (Segment and MCTree) does the same calculation via a deterministic algorithm. This file implements a generic interface to these two models.

Copyright

Copyright (c) 2020, Alan R. Rogers roger.nosp@m.s@an.nosp@m.thro..nosp@m.utah.nosp@m..edu. This file is released under the Internet Systems Consortium License, which can be found in file "LICENSE".