Convert raf files to daf files.

raf2daf: converts raf files to daf files

Raf2daf reads data in .raf format and writes the corresponding daf files.

Usage

Usage: raf2daf [options] <in1> <in2> ...
   where <in1> and <in2> are input files in raf format. The last
   input file should be the outgroup. Writes to standard
   output.

Options may include:
   -m or --logMismatch
      log AA/DA mismatches to raf2daf.log
   -A or --logAA
      log sites with uncallable ancestral alleles
   -a or --logAll
      log all sites to raf2daf.log
   -h or --help
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Copyright: Copyright (c) 2018, Alan R. Rogers roger.nosp@m.s@an.nosp@m.thro..nosp@m.utah.nosp@m..edu. This file is released under the Internet Systems Consortium License, which can be found in file "LICENSE".