legofit/html/boot_8h_source.html

#ifndef LEGO_BOOT_H

#  define LEGO_BOOT_H


#  include "typedefs.h"

#  include <gsl/gsl_rng.h>


#define DEF_BOOT_BLOCK_SIZE 500


Boot       *Boot_new(int nchr, long nsnp[nchr], long nrep, int npat,

                     long blocksize, gsl_rng * rng);

void        Boot_free(Boot * self);

void        Boot_add(Boot *self, int chr, long snpndx, int pat, double z);

void        Boot_aggregate(Boot * self, int rep, int npat,

                           double count[npat]);

void        Boot_print(const Boot * self, FILE * ofp);

#ifndef NDEBUG

void        Boot_sanityCheck(const Boot * self, const char *file, int line);

#endif


void        confidenceBounds(double *lowBnd, double *highBnd, double confidence,

                             long len, double v[len]);


#  ifndef NDEBUG

unsigned    Boot_multiplicity_slow(Boot * self, long snp, long rep);

#  endif

#endif

Boot_new
Boot * Boot_new(int nchr, long nsnp[nchr], long nrep, int npat, long blocksize, gsl_rng *rng)
Constructor for class Boot.
Definition: boot.c:62

Boot_free
void Boot_free(Boot *self)
Destructor.
Definition: boot.c:232

Boot_print
void Boot_print(const Boot *self, FILE *ofp)
Print a Boot object.
Definition: boot.c:328

Boot_add
void Boot_add(Boot *self, int chr, long snpndx, int pat, double z)
Add one site pattern contribution to a Boot structure.
Definition: boot.c:216

Boot_aggregate
void Boot_aggregate(Boot *self, int rep, int npat, double count[npat])
Add to an array the site pattern counts from a bootstrap replicate.
Definition: boot.c:256

confidenceBounds
void confidenceBounds(double *lowBnd, double *highBnd, double confidence, long len, double v[len])
Calculate confidence bounds from a vector of values representing samples drawn from the sampling dist...
Definition: boot.c:318

Boot
Contains the all data involved in a moving blocks bootstrap.
Definition: boot.c:34