Legofit
infers population history from nucleotide site patterns.
Data Fields
Boot Struct Reference

Contains the all data involved in a moving blocks bootstrap. More...

Data Fields

int nchr
 number of chromosomes
 
long nsnp
 number of snps (across all chromosomes)
 
long blocksize
 number of SNPs per block
 
long nrep
 number of bootstrap replicates
 
long nblock
 number of blocks
 
int npat
 number of site patterns
 
double ** count
 count[i][j]: j'th site pattern in i'th rep
 
long ** start
 start[i][j] = start of j'th block in i'th rep
 
long * cum
 cum[i] is number of SNPs preceding chromosome i
 

Detailed Description

Contains the all data involved in a moving blocks bootstrap.


The documentation for this struct was generated from the following file: