Legofit
infers population history from nucleotide site patterns.
Functions | Variables
clic.c File Reference
#include "hessian.h"
#include "misc.h"
#include "strdblqueue.h"
#include <stdio.h>
#include <stdlib.h>
#include <assert.h>
#include <string.h>
#include <math.h>
#include <time.h>
#include <gsl/gsl_matrix.h>
#include <gsl/gsl_blas.h>

Functions

void usage (void)
 
int main (int argc, char **argv)
 

Variables

const char * usageMsg
 

Variable Documentation

◆ usageMsg

const char* usageMsg
Initial value:
=
"usage: clic [options] <f1.pts> <f2.pts> ... -L <f1.legofit> <f2.legofit ...\n"
" where the .pts files and the .legofit files were all generated by the\n"
" same set of legofit runs. These runs may be on real data plus bootstrap\n"
" replicates, or they may be simulation replicates. All files should have\n"
" the same set of parameters.\n\n"
"Options:\n"
" -h or --help : print this message\n"