network.h

#ifndef ARR_NETWORK_H
#  define ARR_NETWORK_H
 
#  include "typedefs.h"
#  include <stdio.h>
#  include <gsl/gsl_rng.h>
 
#ifndef EXTERN
#  define EXTERN extern
#endif
 
EXTERN enum NetworkType networkType;
 
EXTERN void       *(*Network_dup)(const void *old);
EXTERN int         (*Network_feasible)(const void *self, int verbose);
EXTERN void        (*Network_free)(void *self);
EXTERN LblNdx      (*Network_getLblNdx)(void *self);
EXTERN const char *(*Network_getNameFree)(void * self, int i);
EXTERN void        (*Network_getParams)(void *self, int n, double x[n]);
EXTERN void       *(*Network_new)(const char *fname, Bounds bnd);
EXTERN unsigned    (*Network_nsamples)(const void *self);
EXTERN int         (*Network_nFree)(const void *self);
EXTERN void        (*Network_brlen)(void *self, BranchTab *branchtab,
                                    gsl_rng *rng, unsigned long nreps,
                                    int doSing,
                                    long unsigned *event_counter);
EXTERN void        (*Network_print)(void *self, FILE *fp);
EXTERN void        (*Network_printParStore)(void *self, FILE *fp);
EXTERN void        (*Network_printParStoreFree)(void *self, FILE *fp);
EXTERN void        (*Network_randomize)(void *self, gsl_rng *rng);
EXTERN void        (*Network_sanityCheck)(void *self, const char *file,
                                          int line);
EXTERN int         (*Network_setParams)(void *self, int n, double x[n]);
EXTERN void        (*Network_initStateVec)(void *vself, int ndx, int n,
                                           double x[n], gsl_rng *rng);
 
EXTERN void       *(*Node_new)(int twoN_i, int start_i, ParStore *ps,
                               const char *label);
EXTERN int         (*Node_addChild)(void * parent, void * child);
EXTERN int         (*Node_mix)(void * child, int mix_i, void * introgressor,
                               void * native, ParStore *ps);
EXTERN void       *(*Node_root)(void * self);
EXTERN void        (*Node_print)(void * vself, FILE * fp, int indent);
 
void Network_init(enum NetworkType type);
void Network_patprob(void *self, BranchTab *branchtab,
                     gsl_rng *rng, unsigned long nreps,
                     int doSing, long unsigned *event_counter);
 
#endif