resid.c File Reference

#include "error.h"
#include "strdblqueue.h"
#include "misc.h"
#include "branchtab.h"
#include <strings.h>
#include <time.h>

Data Structures
struct	Mapping
struct	LblNdxBranchTab

Functions
void	usage (void)
int	Mapping_size (Mapping *self)
Mapping *	Mapping_new (const char *lhs, const char *rhs)
void	Mapping_free (Mapping *self)
const char *	Mapping_lhs (Mapping *self)
const char *	Mapping_rhs (Mapping *self)
void	Mapping_print (Mapping *self, FILE *fp)
LblNdxBranchTab	removePops (LblNdx lndx, BranchTab *bt, const char *deleteStr)
LblNdxBranchTab	collapsePops (LblNdx lndx, BranchTab *bt, const char *collapseStr, const char *lbl)
int	main (int argc, char **argv)

Variables
const char *	usageMsg

Variable Documentation

usageMsg

const char* usageMsg

Initial value:

=
    "\nusage: resid [options] <d1>  <d2> ... [-L <f1> <f2> ...]"
    " [-D x:y:z] \\\n"
    "   [-M c=a:b d=c:e:f ...]\n\n"
    "where <d1>, <d2>, ... are names of files containing observed\n"
    "site pattern frequencies, and <f1>, <f2>, ... contain the\n"
    "corresponding fitted values as produced by legofit. Must include\n"
    "at least one data file. Fitted files are optional. If present, their\n"
    "number must equal that of the data files. The optional -D argument\n"
    "introduces a colon-separated list of populations to delete. The\n"
    "optional -M argument introduces one or more remappings, which collapse\n"
    "two or more populations into a single label. Data files must precede\n"
    "the -L, -D, and -M arguments on the command line.\n\n"
    "Options:\n" "   -h or --help   : print this message.\n"