typedefs.h

#ifndef HAVE_TYPEDEFS
#  define HAVE_TYPEDEFS
 
#include <stdint.h>
#define FILENAMESIZE 200
 
typedef struct AddrParMap AddrParMap;
typedef struct Boot Boot;
typedef struct BootChr BootChr;
typedef struct Bounds Bounds;
typedef struct BranchTab BranchTab;
typedef struct Constraint Constraint;
typedef struct EventLst EventLst;
typedef struct Gene Gene;
typedef struct GPTree GPTree;
typedef struct HashTab HashTab;
typedef struct HashTabSeq HashTabSeq;
typedef struct History History;
typedef struct IdSet IdSet;
typedef struct IdSetSet IdSetSet;
typedef struct LblNdx LblNdx;
typedef struct LineReader LineReader;
typedef struct LongVec LongVec;
typedef struct MCTree MCTree;
typedef struct NameList NameList;
typedef struct Network Network;
typedef struct Param Param;
typedef struct ParStore ParStore;
typedef struct Point Point;
typedef struct PointBuff PointBuff;
typedef struct PopNode PopNode;
typedef struct PtrPair PtrPair;
typedef struct PtrPtrMap PtrPtrMap;
typedef struct PtrU32Map PtrU32Map;
typedef struct PtrLst PtrLst;
typedef struct PtrQueue PtrQueue;
typedef struct PtrVec PtrVec;
typedef struct ScrmReader ScrmReader;
typedef struct Segment Segment;
typedef struct SimReader SimReader;
typedef struct SimSched SimSched;
typedef struct SampNdx SampNdx;
typedef struct SplitLst SplitLst;
typedef struct State State;
typedef struct Stirling2 Stirling2;
typedef struct StrDblQueue StrDblQueue;
typedef struct StrDblMap StrDblMap;
typedef struct StrStrMap StrStrMap;
typedef struct StrInt StrInt;
typedef struct StrParMap StrParMap;
typedef struct StrPtrMap StrPtrMap;
typedef struct Tokenizer Tokenizer;
typedef struct UINTqueue UINTqueue;
typedef struct U64U64Map U64U64Map;
typedef struct U64I64Map U64I64Map;
typedef struct DAFReader DAFReader;
typedef struct RAFReader RAFReader;
 
// For returning a pair of pointers
struct PtrPair {
    void *a, *b;
};
 
#if 1
#  define TIPID_SIZE 32
typedef uint32_t tipId_t;
#else
#  define TIPID_SIZE 64
typedef uint64_t tipId_t;
#endif
 
#define KL_COST 1
#define LNL_COST 2
#define COST KL_COST
 
#define FREE 1
#define FIXED 2
#define CONSTRAINED 4
#define TWON 8
#define TIME 16
#define MIXFRAC 32
#define ARBITRARY 64
 
#define POPNAMESIZE 30
#define MAXSAMP ((int)(8*sizeof(tipId_t)))
 
// silence compiler warning about unused function parameter
#define UNUSED(x) (void)(x)
 
enum NetworkType { STOCHASTIC, DETERMINISTIC };
 
#endif