Related Pages

Here is a list of all related documentation pages:

axt2raf	Convert axt format to raf format
bepe	Bootstrap estimate of prediction error
booma	Bootstrap model averaging
bootci	Calculate confidence interval from a flat file
clic	Composite likelihood information criterion
cost	Calculate cost function
daf	Calculate derived allele frequency, daf
diffev	Numerical minimization using differential evolution (DE)
diverg	Compare two sets of site-pattern counts or frequencies
flatfile	Read legofit output files; write flat file of estimates
flatpat	Read files of site pattern counts or frequencies and write a flat file with a column for each site pattern and a row for each input file
joinraf	Merge two or more raf files
legofit	Estimate parameters describing population sizes, the times of separations and of episodes of gene flow, and levels of gene flow
legosim	Generate site patterns by coalescent simulation
LongVec	An expandable vector of long ints
mapmix	Map admixture across the genome
mkfitted	Make a fitted .lgo file from .legofit output
ms2sim	Ms2sim translates output from Dick Hudson's ms program into "sim" format, which is described on the simpat page
pclgo	Re-express free variables in terms of principal components
pripos	Convert prior prob of admixture into posterior prob
PtrLst	An expandable array (or stack) of pointers
PtrVec	An expandable array (or stack) of pointers
raf	Calculate reference allele frequency, raf
raf2daf	Convert raf files to daf files
rafdaf	Read a list of .raf files and write derived allele frequencies
rational	Exact arithmetic with rational numbers
resid	Print site pattern frequencies or residuals
scrmpat	Tabulate site pattern frequencies from .daf files
scrmreader	Interface to scrm output files
simpat	Tabulate site pattern frequencies from data produced by ms2sim or msprime
simreader	Interface to output files produced by ms2sim and msprime
sitepat	Tabulate site pattern frequencies from .raf files
tabpat	Tabulate site pattern frequencies from .daf files